HL_4V7I_062

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_062 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.4276

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V7I|1|A8|A|2471
4V7I|1|A8|G|2472
4V7I|1|A8|U|2473
4V7I|1|A8|U|2474
4V7I|1|A8|C|2475
4V7I|1|A8|A|2476
4V7I|1|A8|U|2477
4V7I|1|A8|A|2478
4V7I|1|A8|U|2479

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L36

Chain AG

50S ribosomal protein L6

Chain AM

50S ribosomal protein L16