3D structure

PDB id
4V7I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome-SecY complex.
Experimental method
ELECTRON MICROSCOPY
Resolution
9.6 Å

Loop

Sequence
UGAAGUAG
Length
8 nucleotides
Bulged bases
4V7I|1|A8|G|2529
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V7I_063 not in the Motif Atlas
Homologous match to HL_5J7L_194
Geometric discrepancy: 0.3101
The information below is about HL_5J7L_194
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_31585.4
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
20

Unit IDs

4V7I|1|A8|U|2528
4V7I|1|A8|G|2529
4V7I|1|A8|A|2530
4V7I|1|A8|A|2531
4V7I|1|A8|G|2532
4V7I|1|A8|U|2533
4V7I|1|A8|A|2534
4V7I|1|A8|G|2535

Current chains

Chain A8
23S ribosomal RNA

Nearby chains

Chain A4
50S ribosomal protein L36
Chain AG
50S ribosomal protein L6

Coloring options:


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