HL_4V7I_068

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V7I|1|A8|G|2751

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_068 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1917

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

4V7I|1|A8|C|2745
4V7I|1|A8|U|2746
4V7I|1|A8|G|2747
4V7I|1|A8|A|2748
4V7I|1|A8|A|2749
4V7I|1|A8|A|2750
4V7I|1|A8|G|2751
4V7I|1|A8|C|2752
4V7I|1|A8|A|2753
4V7I|1|A8|U|2754
4V7I|1|A8|C|2755
4V7I|1|A8|U|2756
4V7I|1|A8|A|2757
4V7I|1|A8|A|2758
4V7I|1|A8|G|2759

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L36

Chain AG

50S ribosomal protein L6

Chain AJ

50S ribosomal protein L13