HL_4V7I_089

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

4V7I|1|BA|C|841, 4V7I|1|BA|U|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_089 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1825

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

4V7I|1|BA|C|840
4V7I|1|BA|C|841
4V7I|1|BA|U|842
4V7I|1|BA|U|843
4V7I|1|BA|G|844
4V7I|1|BA|A|845
4V7I|1|BA|G|846

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BB

30S ribosomal protein S2

Chain BR

30S ribosomal protein S18