HL_4V7I_091

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_091 not in the Motif Atlas

Homologous match to HL_5J7L_020

Geometric discrepancy: 0.2145

The information below is about HL_5J7L_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V7I|1|BA|C|897
4V7I|1|BA|G|898
4V7I|1|BA|C|899
4V7I|1|BA|A|900
4V7I|1|BA|A|901
4V7I|1|BA|G|902

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain A8

Large subunit ribosomal RNA; LSU rRNA