HL_4V7I_092

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

4V7I|1|BA|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_092 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.3934

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V7I|1|BA|G|963
4V7I|1|BA|A|964
4V7I|1|BA|U|965
4V7I|1|BA|G|966
4V7I|1|BA|C|967
4V7I|1|BA|A|968
4V7I|1|BA|A|969
4V7I|1|BA|C|970
4V7I|1|BA|G|971
4V7I|1|BA|C|972

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BI

30S ribosomal protein S9

Chain BJ

30S ribosomal protein S10

Chain BM

30S ribosomal protein S13