HL_4V7I_106

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

4V7I|1|A8|U|2555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_106 not in the Motif Atlas

Homologous match to HL_5J7L_195

Geometric discrepancy: 0.3704

The information below is about HL_5J7L_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V7I|1|A8|C|2551
4V7I|1|A8|U|2552
4V7I|1|A8|G|2553
4V7I|1|A8|U|2554
4V7I|1|A8|U|2555
4V7I|1|A8|C|2556
4V7I|1|A8|G|2557

Current chains

Chain A8

23S ribosomal RNA

Nearby chains