HL_4V7J_012

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

4V7J|1|AA|G|329, 4V7J|1|AA|A|330, 4V7J|1|AA|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7J_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0903

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

4V7J|1|AA|G|327
4V7J|1|AA|U|328
4V7J|1|AA|G|329
4V7J|1|AA|A|330
4V7J|1|AA|A|331
4V7J|1|AA|A|332
4V7J|1|AA|G|333
4V7J|1|AA|C|334
4V7J|1|AA|C|335

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AY

50S ribosomal protein L24