HL_4V7J_215
3D structure
- PDB id
- 4V7J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelE nuclease bound to the 70S ribosome (precleavage state)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGCUCAUAACC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V7J_215 not in the Motif Atlas
- Geometric match to HL_4UYK_001
- Geometric discrepancy: 0.366
- The information below is about HL_4UYK_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14063.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V7J|1|Bw|G|30
4V7J|1|Bw|G|31
4V7J|1|Bw|C|32
4V7J|1|Bw|U|33
4V7J|1|Bw|C|34
4V7J|1|Bw|A|35
4V7J|1|Bw|U|36
4V7J|1|Bw|A|37
4V7J|1|Bw|A|38
4V7J|1|Bw|C|39
4V7J|1|Bw|C|40
Current chains
- Chain Bw
- RNA (77-MER)
Nearby chains
- Chain Ba
- Small subunit ribosomal RNA; SSU rRNA
- Chain Bg
- 30S ribosomal protein S7
- Chain Bk
- 30S ribosomal protein S11
- Chain Bv
- Transfer RNA; tRNA
- Chain Bx
- RNA (5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*A*AP*AP*AP*AP*UP*GP*(OMU)P*(A2M)P*(OMG)P*AP*AP*AP*A)-3')
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