HL_4V7J_243

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUGAAAGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7J_243 not in the Motif Atlas

Geometric match to HL_5J7L_212

Geometric discrepancy: 0.3851

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V7J|1|Aa|G|1010
4V7J|1|Aa|G|1011
4V7J|1|Aa|U|1012
4V7J|1|Aa|G|1013
4V7J|1|Aa|A|1014
4V7J|1|Aa|A|1015
4V7J|1|Aa|A|1016
4V7J|1|Aa|G|1017
4V7J|1|Aa|C|1018
4V7J|1|Aa|C|1019

Current chains

Chain Aa

RNA (1504-MER)

Nearby chains

Chain An

30S ribosomal protein S14 type Z

Chain As

30S ribosomal protein S19