HL_4V7K_087
3D structure
- PDB id
- 4V7K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V7K_087 not in the Motif Atlas
- Homologous match to HL_4LFB_015
- Geometric discrepancy: 0.0952
- The information below is about HL_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
4V7K|1|Aa|C|689
4V7K|1|Aa|G|690
4V7K|1|Aa|G|691
4V7K|1|Aa|U|692
4V7K|1|Aa|G|693
4V7K|1|Aa|A|694
4V7K|1|Aa|A|695
4V7K|1|Aa|A|696
4V7K|1|Aa|U|697
4V7K|1|Aa|G|698
Current chains
- Chain Aa
- RNA (1504-MER)
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ag
- 30S ribosomal protein S7
- Chain Ak
- 30S ribosomal protein S11
- Chain Aw
- Transfer RNA; tRNA
- Chain Ax
- RNA (5'-R(*A*AP*GP*UP*AP*AP*AP*AP*AP*UP*GP*UP*A*(CCC))-3')
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