HL_4V7K_127

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

4V7K|1|BA|C|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7K_127 not in the Motif Atlas

Geometric match to HL_7RQB_018

Geometric discrepancy: 0.0683

The information below is about HL_7RQB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4V7K|1|BA|U|566
4V7K|1|BA|A|567
4V7K|1|BA|U|568
4V7K|1|BA|U|569
4V7K|1|BA|G|570
4V7K|1|BA|A|571
4V7K|1|BA|A|572
4V7K|1|BA|G|573
4V7K|1|BA|C|574
4V7K|1|BA|A|575

Current chains

Chain BA

RNA (2848-MER)

Nearby chains

Chain B5

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3

Chain BP

50S ribosomal protein L15

Chain BV

50S ribosomal protein L21