HL_4V7K_176

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V7K|1|BA|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7K_176 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0856

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4V7K|1|BA|C|2745
4V7K|1|BA|U|2746
4V7K|1|BA|G|2747
4V7K|1|BA|A|2748
4V7K|1|BA|A|2749
4V7K|1|BA|A|2750
4V7K|1|BA|G|2751
4V7K|1|BA|C|2752
4V7K|1|BA|A|2753
4V7K|1|BA|U|2754
4V7K|1|BA|C|2755
4V7K|1|BA|U|2756
4V7K|1|BA|A|2757
4V7K|1|BA|A|2758
4V7K|1|BA|G|2759

Current chains

Chain BA

RNA (2848-MER)

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6

Chain BN

50S ribosomal protein L13