HL_4V7K_213

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

4V7K|1|Bv|C|16, 4V7K|1|Bv|G|18, 4V7K|1|Bv|G|19, 4V7K|1|Bv|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7K_213 not in the Motif Atlas

Homologous match to HL_5E81_211

Geometric discrepancy: 0.1601

The information below is about HL_5E81_211

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4V7K|1|Bv|C|13
4V7K|1|Bv|A|14
4V7K|1|Bv|G|15
4V7K|1|Bv|C|16
4V7K|1|Bv|C|17
4V7K|1|Bv|U|17|||A
4V7K|1|Bv|G|18
4V7K|1|Bv|G|19
4V7K|1|Bv|U|20
4V7K|1|Bv|A|21
4V7K|1|Bv|G|22

Current chains

Chain Bv

RNA (77-MER)

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BG

50S ribosomal protein L5