HL_4V7K_217
3D structure
- PDB id
- 4V7K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GGGCUCAUAACCC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V7K_217 not in the Motif Atlas
- Homologous match to HL_6GSL_221
- Geometric discrepancy: 0.4185
- The information below is about HL_6GSL_221
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06285.3
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V7K|1|Bw|G|29
4V7K|1|Bw|G|30
4V7K|1|Bw|G|31
4V7K|1|Bw|C|32
4V7K|1|Bw|U|33
4V7K|1|Bw|C|34
4V7K|1|Bw|A|35
4V7K|1|Bw|U|36
4V7K|1|Bw|A|37
4V7K|1|Bw|A|38
4V7K|1|Bw|C|39
4V7K|1|Bw|C|40
4V7K|1|Bw|C|41
Current chains
- Chain Bw
- RNA (77-MER)
Nearby chains
- Chain Ba
- Small subunit ribosomal RNA; SSU rRNA
- Chain Bg
- 30S ribosomal protein S7
- Chain Bk
- 30S ribosomal protein S11
- Chain Bv
- Transfer RNA; tRNA
- Chain Bx
- RNA (5'-R(*A*AP*GP*UP*AP*AP*AP*AP*AP*UP*GP*UP*A*(CCC))-3')
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