HL_4V7K_221

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCCCACCAGC

Length

10 nucleotides

Bulged bases

4V7K|1|AA|A|887

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7K_221 not in the Motif Atlas

Geometric match to HL_8C3A_015

Geometric discrepancy: 0.3644

The information below is about HL_8C3A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V7K|1|AA|G|883
4V7K|1|AA|C|884
4V7K|1|AA|C|885
4V7K|1|AA|C|886
4V7K|1|AA|A|887
4V7K|1|AA|C|888
4V7K|1|AA|C|889
4V7K|1|AA|A|890
4V7K|1|AA|G|892
4V7K|1|AA|C|893

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain Am

30S ribosomal protein S13