HL_8C3A_015

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGUAAAAC

Length

9 nucleotides

Bulged bases (A, C, G, U)

687U, 689A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03345.1

Basepair signature

cWW-cSW-tSH-F

Number of instances in this motif group

3

Unit IDs

8C3A|1|1|G|684
8C3A|1|1|U|685
8C3A|1|1|G|686
8C3A|1|1|U|687
8C3A|1|1|A|688
8C3A|1|1|A|689
8C3A|1|1|A|690
8C3A|1|1|A|691
8C3A|1|1|C|692

Current chains

Chain 1

25S

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 9

Ribosomal protein L24

Chain l

60S ribosomal protein L4-B

Chain t

60S ribosomal protein L13

Chain v

60S ribosomal protein L15-A