HL_4V7L_061

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCGAACAGG

Length

9 nucleotides

Bulged bases

4V7L|1|BA|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7L_061 not in the Motif Atlas

Geometric match to HL_4V9F_032

Geometric discrepancy: 0.3278

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4V7L|1|BA|C|640
4V7L|1|BA|C|641
4V7L|1|BA|G|642
4V7L|1|BA|A|643
4V7L|1|BA|A|644
4V7L|1|BA|C|645
4V7L|1|BA|A|646
4V7L|1|BA|G|647
4V7L|1|BA|G|648

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L33

Chain B8

50S ribosomal protein L35

Chain BP

50S ribosomal protein L15