HL_4V7M_175

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

4V7M|1|DA|U|827, 4V7M|1|DA|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7M_175 not in the Motif Atlas

Homologous match to HL_7A0S_024

Geometric discrepancy: 0.173

The information below is about HL_7A0S_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

4V7M|1|DA|U|826
4V7M|1|DA|U|827
4V7M|1|DA|U|828
4V7M|1|DA|A|829
4V7M|1|DA|G|830
4V7M|1|DA|G|831

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DP

50S ribosomal protein L15