HL_4V7M_225

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGGUAAUGGCC

Length

11 nucleotides

Bulged bases

4V7M|1|AA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7M_225 not in the Motif Atlas

Geometric match to HL_3FOZ_004

Geometric discrepancy: 0.395

The information below is about HL_3FOZ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

4V7M|1|AA|G|258
4V7M|1|AA|G|259
4V7M|1|AA|G|260
4V7M|1|AA|U|261
4V7M|1|AA|A|262
4V7M|1|AA|A|263
4V7M|1|AA|U|264
4V7M|1|AA|G|265
4V7M|1|AA|G|266
4V7M|1|AA|C|267
4V7M|1|AA|C|268

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AQ

30S ribosomal protein S17

Chain AT

30S ribosomal protein S20