HL_4V7M_233

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CCAAGCGGUAAGG

Length

13 nucleotides

Bulged bases

4V7M|1|CW|C|16, 4V7M|1|CW|G|17, 4V7M|1|CW|G|18, 4V7M|1|CW|U|19, 4V7M|1|CW|A|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7M_233 not in the Motif Atlas

Homologous match to HL_5J8B_105

Geometric discrepancy: 0.4789

The information below is about HL_5J8B_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7M|1|CW|C|11
4V7M|1|CW|C|12
4V7M|1|CW|A|13
4V7M|1|CW|A|14
4V7M|1|CW|G|15
4V7M|1|CW|C|16
4V7M|1|CW|G|17
4V7M|1|CW|G|18
4V7M|1|CW|U|19
4V7M|1|CW|A|20
4V7M|1|CW|A|21
4V7M|1|CW|G|22
4V7M|1|CW|G|23

Current chains

Chain CW

tRNA-Gln

Nearby chains

Chain CX

Transfer RNA; tRNA

Chain DA

Large subunit ribosomal RNA; LSU rRNA