3D structure

PDB id
4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
CCUGAGAAACGG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V7R_009 not in the Motif Atlas
Homologous match to HL_4V88_195
Geometric discrepancy: 0.2435
The information below is about HL_4V88_195
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

4V7R|1|A1|C|393
4V7R|1|A1|C|394
4V7R|1|A1|U|395
4V7R|1|A1|G|396
4V7R|1|A1|A|397
4V7R|1|A1|G|398
4V7R|1|A1|A|399
4V7R|1|A1|A|400
4V7R|1|A1|A|401
4V7R|1|A1|C|402
4V7R|1|A1|G|403
4V7R|1|A1|G|404

Current chains

Chain A1
18S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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