HL_4V7R_032

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_032 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.3067

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V7R|1|A1|C|1501
4V7R|1|A1|G|1502
4V7R|1|A1|A|1503
4V7R|1|A1|G|1504
4V7R|1|A1|A|1505
4V7R|1|A1|G|1506

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain AI

40S ribosomal protein S15

Chain AM

40S ribosomal protein S19-A