HL_4V7R_040

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

4V7R|1|B1|U|133, 4V7R|1|B1|U|134, 4V7R|1|B1|C|135

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_040 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1478

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V7R|1|B1|C|132
4V7R|1|B1|U|133
4V7R|1|B1|U|134
4V7R|1|B1|C|135
4V7R|1|B1|G|136

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BW

60S ribosomal protein L25

Chain Bc

60S ribosomal protein L35

Chain DX

60S ribosomal protein L26-A