HL_4V7R_052

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_052 not in the Motif Atlas

Homologous match to HL_5TBW_016

Geometric discrepancy: 0.1532

The information below is about HL_5TBW_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V7R|1|B1|U|707
4V7R|1|B1|G|708
4V7R|1|B1|A|709
4V7R|1|B1|A|710
4V7R|1|B1|A|711
4V7R|1|B1|G|712

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BY

60S ribosomal protein L28

Chain Br

Unassigned secondary structure