HL_4V7R_054

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UGUCUUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_054 not in the Motif Atlas

Geometric match to HL_7RQB_009

Geometric discrepancy: 0.2838

The information below is about HL_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89098.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

4V7R|1|B1|U|762
4V7R|1|B1|G|763
4V7R|1|B1|U|764
4V7R|1|B1|C|765
4V7R|1|B1|U|766
4V7R|1|B1|U|767
4V7R|1|B1|C|768
4V7R|1|B1|G|769

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain Br

Unassigned secondary structure