HL_4V7R_055

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_055 not in the Motif Atlas

Homologous match to HL_8C3A_019

Geometric discrepancy: 0.361

The information below is about HL_8C3A_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V7R|1|B1|G|844
4V7R|1|B1|G|845
4V7R|1|B1|A|846
4V7R|1|B1|A|847
4V7R|1|B1|A|848
4V7R|1|B1|C|849

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain AG

40S ribosomal protein S13