HL_4V7R_067
3D structure
- PDB id
- 4V7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4 Å
Loop
- Sequence
- AUGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V7R_067 not in the Motif Atlas
- Homologous match to HL_5TBW_031
- Geometric discrepancy: 0.1853
- The information below is about HL_5TBW_031
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
4V7R|1|B1|A|1462
4V7R|1|B1|U|1463
4V7R|1|B1|G|1464
4V7R|1|B1|A|1465
4V7R|1|B1|G|1466
4V7R|1|B1|A|1467
4V7R|1|B1|A|1468
4V7R|1|B1|C|1469
4V7R|1|B1|U|1470
Current chains
- Chain B1
- 25S ribosomal RNA
Nearby chains
- Chain BS
- 60S ribosomal protein L19
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