HL_4V7R_068

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

4V7R|1|B1|G|1507, 4V7R|1|B1|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_068 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.1425

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4V7R|1|B1|A|1506
4V7R|1|B1|G|1507
4V7R|1|B1|C|1508
4V7R|1|B1|A|1509
4V7R|1|B1|G|1510
4V7R|1|B1|U|1511
4V7R|1|B1|U|1512

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BQ

60S ribosomal protein L17-A

Chain BS

60S ribosomal protein L19