HL_4V7R_081

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GGUAC

Length

5 nucleotides

Bulged bases

4V7R|1|B1|G|2111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_081 not in the Motif Atlas

Homologous match to HL_8C3A_045

Geometric discrepancy: 0.5412

The information below is about HL_8C3A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V7R|1|B1|G|2110
4V7R|1|B1|G|2111
4V7R|1|B1|U|2112
4V7R|1|B1|A|2113
4V7R|1|B1|C|2114

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain BS

60S ribosomal protein L19

Chain BV

60S ribosomal protein L24-A