HL_4V7R_120

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

4V7R|1|C1|C|276, 4V7R|1|C1|G|279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_120 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2355

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V7R|1|C1|C|275
4V7R|1|C1|C|276
4V7R|1|C1|U|277
4V7R|1|C1|U|278
4V7R|1|C1|G|279
4V7R|1|C1|U|280
4V7R|1|C1|G|281

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain Cd

Unassigned secondary structure