HL_4V7R_122

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UAAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_122 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1529

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4V7R|1|C1|U|368
4V7R|1|C1|A|369
4V7R|1|C1|A|370
4V7R|1|C1|G|371
4V7R|1|C1|G|372
4V7R|1|C1|G|373

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain CB

40S ribosomal protein S2

Chain CF

40S ribosomal protein S11

Chain CO

40S ribosomal protein S22-A