HL_4V7R_136

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

4V7R|1|C1|U|1004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_136 not in the Motif Atlas

Geometric match to HL_4V88_208

Geometric discrepancy: 0.238

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

4V7R|1|C1|G|997
4V7R|1|C1|A|998
4V7R|1|C1|U|999
4V7R|1|C1|C|1000
4V7R|1|C1|A|1001
4V7R|1|C1|G|1002
4V7R|1|C1|A|1003
4V7R|1|C1|U|1004
4V7R|1|C1|A|1005
4V7R|1|C1|C|1006
4V7R|1|C1|C|1007

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain CH

40S ribosomal protein S14-A

Chain D1

Large subunit ribosomal RNA; LSU rRNA