HL_4V7R_138

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_138 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.2466

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V7R|1|C1|A|1084
4V7R|1|C1|G|1085
4V7R|1|C1|A|1086
4V7R|1|C1|A|1087
4V7R|1|C1|A|1088
4V7R|1|C1|U|1089

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain CB

40S ribosomal protein S2