HL_4V7R_157

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

4V7R|1|D1|G|218, 4V7R|1|D1|A|219, 4V7R|1|D1|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_157 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.1623

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

4V7R|1|D1|G|216
4V7R|1|D1|U|217
4V7R|1|D1|G|218
4V7R|1|D1|A|219
4V7R|1|D1|G|220
4V7R|1|D1|A|221
4V7R|1|D1|A|222
4V7R|1|D1|U|223
4V7R|1|D1|C|224

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain D3

5.8S ribosomal RNA; 5.8S rRNA

Chain DD

60S ribosomal protein L4-A

Chain DX

60S ribosomal protein L26-A