HL_4V7R_158

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

4V7R|1|D1|A|284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_158 not in the Motif Atlas

Homologous match to HL_8C3A_008

Geometric discrepancy: 0.3362

The information below is about HL_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4V7R|1|D1|U|278
4V7R|1|D1|U|279
4V7R|1|D1|U|280
4V7R|1|D1|G|281
4V7R|1|D1|G|282
4V7R|1|D1|G|283
4V7R|1|D1|A|284
4V7R|1|D1|A|285
4V7R|1|D1|U|286
4V7R|1|D1|G|287

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DO

60S ribosomal protein L15-A

Chain DY

60S ribosomal protein L28

Chain Df

60S ribosomal protein L42