HL_4V7R_164

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

4V7R|1|D1|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_164 not in the Motif Atlas

Homologous match to HL_5TBW_014

Geometric discrepancy: 0.2059

The information below is about HL_5TBW_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4V7R|1|D1|U|640
4V7R|1|D1|C|641
4V7R|1|D1|U|642
4V7R|1|D1|U|643
4V7R|1|D1|G|644
4V7R|1|D1|A|645
4V7R|1|D1|A|646
4V7R|1|D1|A|647
4V7R|1|D1|C|648
4V7R|1|D1|A|649

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DY

60S ribosomal protein L28

Chain Db

60S ribosomal protein L32