HL_4V7R_177

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

4V7R|1|D1|U|1241, 4V7R|1|D1|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_177 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.4888

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V7R|1|D1|C|1239
4V7R|1|D1|A|1240
4V7R|1|D1|U|1241
4V7R|1|D1|G|1242
4V7R|1|D1|G|1243
4V7R|1|D1|A|1244
4V7R|1|D1|A|1245
4V7R|1|D1|G|1246
4V7R|1|D1|U|1247
4V7R|1|D1|C|1248
4V7R|1|D1|G|1249

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DL

60S ribosomal protein L12