HL_4V7R_188

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GUUUAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_188 not in the Motif Atlas

Homologous match to HL_8C3A_038

Geometric discrepancy: 0.5859

The information below is about HL_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4V7R|1|D1|G|1719
4V7R|1|D1|U|1720
4V7R|1|D1|U|1721
4V7R|1|D1|U|1722
4V7R|1|D1|A|1723
4V7R|1|D1|U|1724
4V7R|1|D1|C|1725

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DS

60S ribosomal protein L19

Chain Dg

60S ribosomal protein L43