3D structure

PDB id
4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
UGAACAG
Length
7 nucleotides
Bulged bases
4V7R|1|D1|C|1866
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V7R_192 not in the Motif Atlas
Homologous match to HL_5TBW_042
Geometric discrepancy: 0.1975
The information below is about HL_5TBW_042
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

4V7R|1|D1|U|1862
4V7R|1|D1|G|1863
4V7R|1|D1|A|1864
4V7R|1|D1|A|1865
4V7R|1|D1|C|1866
4V7R|1|D1|A|1867
4V7R|1|D1|G|1868

Current chains

Chain D1
25S ribosomal RNA

Nearby chains

Chain DS
60S ribosomal protein L19

Coloring options:


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