HL_4V7R_193

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V7R|1|D1|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_193 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.1964

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V7R|1|D1|C|1923
4V7R|1|D1|U|1924
4V7R|1|D1|U|1925
4V7R|1|D1|C|1926
4V7R|1|D1|G|1927
4V7R|1|D1|G|1928

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain C1

Small subunit ribosomal RNA; SSU rRNA

Chain Dg

60S ribosomal protein L43