HL_4V7R_206

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

4V7R|1|D1|A|2637, 4V7R|1|D1|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_206 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.1475

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

4V7R|1|D1|U|2633
4V7R|1|D1|U|2634
4V7R|1|D1|A|2635
4V7R|1|D1|A|2636
4V7R|1|D1|A|2637
4V7R|1|D1|C|2638
4V7R|1|D1|G|2639
4V7R|1|D1|A|2640
4V7R|1|D1|U|2641
4V7R|1|D1|A|2642
4V7R|1|D1|A|2643
4V7R|1|D1|C|2644
4V7R|1|D1|G|2645

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DJ

60S ribosomal protein L10

Chain DT

60S ribosomal protein L21-A