HL_4V7R_211

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CGGAAUUUG

Length

9 nucleotides

Bulged bases

4V7R|1|D1|G|2777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_211 not in the Motif Atlas

Homologous match to HL_8C3A_061

Geometric discrepancy: 0.1211

The information below is about HL_8C3A_061

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

4V7R|1|D1|C|2776
4V7R|1|D1|G|2777
4V7R|1|D1|G|2778
4V7R|1|D1|A|2779
4V7R|1|D1|A|2780
4V7R|1|D1|U|2781
4V7R|1|D1|U|2782
4V7R|1|D1|U|2783
4V7R|1|D1|G|2784

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DY

60S ribosomal protein L28

Chain Df

60S ribosomal protein L42