HL_4V7R_212

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_212 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.3203

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V7R|1|D1|C|2840
4V7R|1|D1|G|2841
4V7R|1|D1|U|2842
4V7R|1|D1|U|2843
4V7R|1|D1|C|2844
4V7R|1|D1|A|2845
4V7R|1|D1|U|2846
4V7R|1|D1|A|2847
4V7R|1|D1|G|2848

Current chains

Chain D1

25S ribosomal RNA

Nearby chains