HL_4V7R_225
3D structure
- PDB id
- 4V7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V7R_225 not in the Motif Atlas
- Geometric match to HL_7RQB_001
- Geometric discrepancy: 0.2672
- The information below is about HL_7RQB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99167.2
- Basepair signature
- cWW-F-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V7R|1|D3|C|47
4V7R|1|D3|A|48
4V7R|1|D3|G|49
4V7R|1|D3|C|50
4V7R|1|D3|G|51
4V7R|1|D3|A|52
4V7R|1|D3|A|53
4V7R|1|D3|A|54
4V7R|1|D3|U|55
4V7R|1|D3|G|56
Current chains
- Chain D3
- 5.8S ribosomal RNA
Nearby chains
- Chain D1
- Large subunit ribosomal RNA; LSU rRNA
- Chain DW
- 60S ribosomal protein L25
- Chain Dc
- 60S ribosomal protein L35
- Chain Dd
- 60S ribosomal protein L37-A
- Chain De
- 60S ribosomal protein L39
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