HL_4V7R_238

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

4V7R|1|B1|G|2898, 4V7R|1|B1|C|2899

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7R_238 not in the Motif Atlas

Homologous match to HL_8P9A_173

Geometric discrepancy: 0.4487

The information below is about HL_8P9A_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

4V7R|1|B1|A|2897
4V7R|1|B1|G|2898
4V7R|1|B1|C|2899
4V7R|1|B1|A|2900
4V7R|1|B1|G|2901
4V7R|1|B1|A|2902
4V7R|1|B1|A|2903
4V7R|1|B1|U|2904

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BI

60S ribosomal protein L9-A