HL_4V7U_219

3D structure

PDB id

4V7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUGAAAAGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7U_219 not in the Motif Atlas

Geometric match to HL_5E81_236

Geometric discrepancy: 0.3753

The information below is about HL_5E81_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23827.2

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V7U|1|DA|G|1280
4V7U|1|DA|G|1281
4V7U|1|DA|U|1282
4V7U|1|DA|G|1283
4V7U|1|DA|A|1284
4V7U|1|DA|A|1285
4V7U|1|DA|A|1286
4V7U|1|DA|A|1287
4V7U|1|DA|G|1288
4V7U|1|DA|C|1289
4V7U|1|DA|C|1290

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain DN

50S ribosomal protein L17

Chain DS

50S ribosomal protein L22