HL_4V80_185

3D structure

PDB id

4V80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGUGAAGAUGCA

Length

12 nucleotides

Bulged bases

4V80|1|DA|A|2030, 4V80|1|DA|A|2031, 4V80|1|DA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V80_185 not in the Motif Atlas

Geometric match to HL_4V7M_040

Geometric discrepancy: 0.3907

The information below is about HL_4V7M_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

4V80|1|DA|U|2026
4V80|1|DA|G|2027
4V80|1|DA|U|2028
4V80|1|DA|G|2029
4V80|1|DA|A|2030
4V80|1|DA|A|2031
4V80|1|DA|G|2032
4V80|1|DA|A|2033
4V80|1|DA|U|2034
4V80|1|DA|G|2035
4V80|1|DA|C|2036
4V80|1|DA|A|2037

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DJ

50S ribosomal protein L13