HL_4V83_100

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V83|1|BA|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V83_100 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0955

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4V83|1|BA|C|2745
4V83|1|BA|U|2746
4V83|1|BA|G|2747
4V83|1|BA|A|2748
4V83|1|BA|A|2749
4V83|1|BA|A|2750
4V83|1|BA|G|2751
4V83|1|BA|C|2752
4V83|1|BA|A|2753
4V83|1|BA|U|2754
4V83|1|BA|C|2755
4V83|1|BA|U|2756
4V83|1|BA|A|2757
4V83|1|BA|A|2758
4V83|1|BA|G|2759

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BG

50S ribosomal protein L6

Chain BJ

50S ribosomal protein L13