HL_4V83_121

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V83_121 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.0865

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4V83|1|CA|C|689
4V83|1|CA|G|690
4V83|1|CA|G|691
4V83|1|CA|U|692
4V83|1|CA|G|693
4V83|1|CA|A|694
4V83|1|CA|A|695
4V83|1|CA|A|696
4V83|1|CA|U|697
4V83|1|CA|G|698

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CK

30S ribosomal protein S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA